Comparative transcriptional profiling of orange fruit in response to the biocontrol yeast Kloeckera apiculata and its active compounds
Identifieur interne : 000279 ( Main/Exploration ); précédent : 000278; suivant : 000280Comparative transcriptional profiling of orange fruit in response to the biocontrol yeast Kloeckera apiculata and its active compounds
Auteurs : Pu Liu [République populaire de Chine] ; Kai Chen [République populaire de Chine] ; Guofeng Li [République populaire de Chine] ; Xiaoping Yang [République populaire de Chine] ; Chao-An Long [République populaire de Chine]Source :
- BMC Genomics [ 1471-2164 ] ; 2016.
English descriptors
- KwdEn :
- Calcium Signaling (genetics), Citrus sinensis (genetics), Citrus sinensis (growth & development), Citrus sinensis (microbiology), Cyclopentanes (metabolism), Ethylenes (metabolism), Fruit (genetics), Fruit (growth & development), Gene Expression Profiling, Gene Expression Regulation, Plant, Kloeckera (drug effects), Kloeckera (pathogenicity), Mitogen-Activated Protein Kinase Kinases (genetics), Oxylipins (metabolism), Phenylalanine (metabolism), Phenylethyl Alcohol (pharmacology).
- MESH :
- chemical , genetics : Mitogen-Activated Protein Kinase Kinases.
- chemical , metabolism : Cyclopentanes, Ethylenes, Oxylipins, Phenylalanine.
- drug effects : Kloeckera.
- genetics : Calcium Signaling, Citrus sinensis, Fruit.
- growth & development : Citrus sinensis, Fruit.
- microbiology : Citrus sinensis.
- pathogenicity : Kloeckera.
- chemical , pharmacology : Phenylethyl Alcohol.
- Gene Expression Profiling, Gene Expression Regulation, Plant.
Abstract
The yeast
As many as 801, 339 and 608 differentially expressed genes (DEGs) were identified after the application of
This study provides a global picture of the gene expression changes in navel oranges after the application of the antagonist yeast
The online version of this article (doi:10.1186/s12864-015-2333-3) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/s12864-015-2333-3
PubMed: 26725242
PubMed Central: 4698812
Affiliations:
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China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Kai" sort="Chen, Kai" uniqKey="Chen K" first="Kai" last="Chen">Kai Chen</name><affiliation wicri:level="1"><nlm:aff id="Aff2">Key Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan, 430070 P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author><author><name sortKey="Li, Guofeng" sort="Li, Guofeng" uniqKey="Li G" first="Guofeng" last="Li">Guofeng Li</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Pomology, Anhui Agricultural University, Hefei, 230036 P. R. 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R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Pomology, Anhui Agricultural University, Hefei</wicri:regionArea><placeName><settlement type="city">Hefei</settlement><region type="province">Anhui</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff2">Key Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan, 430070 P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Kai" sort="Chen, Kai" uniqKey="Chen K" first="Kai" last="Chen">Kai Chen</name><affiliation wicri:level="1"><nlm:aff id="Aff2">Key Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan, 430070 P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author><author><name sortKey="Li, Guofeng" sort="Li, Guofeng" uniqKey="Li G" first="Guofeng" last="Li">Guofeng Li</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Pomology, Anhui Agricultural University, Hefei, 230036 P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Pomology, Anhui Agricultural University, Hefei</wicri:regionArea><placeName><settlement type="city">Hefei</settlement><region type="province">Anhui</region></placeName></affiliation></author><author><name sortKey="Yang, Xiaoping" sort="Yang, Xiaoping" uniqKey="Yang X" first="Xiaoping" last="Yang">Xiaoping Yang</name><affiliation wicri:level="1"><nlm:aff id="Aff3">Research Institute of Fruit and Tea, Hubei Academy of Agricultural Science, Wuhan, 430064 P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Research Institute of Fruit and Tea, Hubei Academy of Agricultural Science, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author><author><name sortKey="Long, Chao An" sort="Long, Chao An" uniqKey="Long C" first="Chao-An" last="Long">Chao-An Long</name><affiliation wicri:level="1"><nlm:aff id="Aff2">Key Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan, 430070 P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author></analytic><series><title level="j">BMC Genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Calcium Signaling (genetics)</term><term>Citrus sinensis (genetics)</term><term>Citrus sinensis (growth & development)</term><term>Citrus sinensis (microbiology)</term><term>Cyclopentanes (metabolism)</term><term>Ethylenes (metabolism)</term><term>Fruit (genetics)</term><term>Fruit (growth & development)</term><term>Gene Expression Profiling</term><term>Gene Expression Regulation, Plant</term><term>Kloeckera (drug effects)</term><term>Kloeckera (pathogenicity)</term><term>Mitogen-Activated Protein Kinase Kinases (genetics)</term><term>Oxylipins (metabolism)</term><term>Phenylalanine (metabolism)</term><term>Phenylethyl Alcohol (pharmacology)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Mitogen-Activated Protein Kinase Kinases</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Cyclopentanes</term><term>Ethylenes</term><term>Oxylipins</term><term>Phenylalanine</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Kloeckera</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Calcium Signaling</term><term>Citrus sinensis</term><term>Fruit</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Citrus sinensis</term><term>Fruit</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Citrus sinensis</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Kloeckera</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Phenylethyl Alcohol</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term><term>Gene Expression Regulation, Plant</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>The yeast <italic>Kloeckera apiculata</italic> strain 34–9 is an antagonist that shows biological control activity against the postharvest fungal pathogens of citrus. An antifungal compound, 2-phenylethanol (PEA), has been identified from the extract of <italic>K. apiculata</italic>. To better understand the molecular processes underlying the response of citrus fruit tissue to <italic>K. apiculata</italic>, the extract and PEA, microarray analyses were performed on navel oranges using an Affymetrix Citrus GeneChip.</p></sec><sec><title>Results</title><p>As many as 801, 339 and 608 differentially expressed genes (DEGs) were identified after the application of <italic>K. apiculata,</italic> the extract and PEA, respectively. In general, <italic>K. apiculata</italic> induced the expression of defence-related genes. In addition to chitinase and β-1,3-glucanase, genes involved in ethylene (ET), jasmonic acid (JA), calcium signalling, MAPK signalling and phenylalanine metabolism were induced. In contrast, monodehydroascorbate reductase, superoxide dismutase (SOD), catalase (CAT), peroxidase (POD) and carotenoid biosynthesis genes were down-regulated. The expression profiles for the extract- and PEA-treated samples were similar to that found for yeast (sharing 57.4 % DEGs), with a significant increase in the transcript levels of defence-related genes.</p></sec><sec><title>Conclusion</title><p>This study provides a global picture of the gene expression changes in navel oranges after the application of the antagonist yeast <italic>K. apiculata</italic>, its extract and PEA. The interpretation of the DEGs revealed new insight into the molecular processes that regulate the defence responses in orange tissue.</p></sec><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1186/s12864-015-2333-3) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Janisiewicz, Wj" uniqKey="Janisiewicz W">WJ Janisiewicz</name></author><author><name sortKey="Korsten, L" uniqKey="Korsten L">L Korsten</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Droby, S" uniqKey="Droby S">S Droby</name></author><author><name sortKey="Wisniewski, M" uniqKey="Wisniewski M">M Wisniewski</name></author><author><name sortKey="Macarisin, D" uniqKey="Macarisin D">D Macarisin</name></author><author><name sortKey="Wilson, C" uniqKey="Wilson C">C 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Economou</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Liu, Jh" uniqKey="Liu J">JH Liu</name></author><author><name sortKey="Moriguchi, T" uniqKey="Moriguchi T">T Moriguchi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Shi, J" uniqKey="Shi J">J Shi</name></author><author><name sortKey="Fu, Xz" uniqKey="Fu X">XZ Fu</name></author><author><name sortKey="Peng, T" uniqKey="Peng T">T Peng</name></author><author><name sortKey="Huang, Xs" uniqKey="Huang X">XS Huang</name></author><author><name sortKey="Fan, Qj" uniqKey="Fan Q">QJ Fan</name></author><author><name sortKey="Liu, Jh" uniqKey="Liu J">JH Liu</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country><region><li>Anhui</li></region><settlement><li>Hefei</li></settlement></list><tree><country name="République populaire de Chine"><region name="Anhui"><name sortKey="Liu, Pu" sort="Liu, Pu" uniqKey="Liu P" first="Pu" last="Liu">Pu Liu</name></region><name sortKey="Chen, Kai" sort="Chen, Kai" uniqKey="Chen K" first="Kai" last="Chen">Kai Chen</name><name sortKey="Li, Guofeng" sort="Li, Guofeng" uniqKey="Li G" first="Guofeng" last="Li">Guofeng Li</name><name sortKey="Liu, Pu" sort="Liu, Pu" uniqKey="Liu P" first="Pu" last="Liu">Pu Liu</name><name sortKey="Long, Chao An" sort="Long, Chao An" uniqKey="Long C" first="Chao-An" last="Long">Chao-An Long</name><name sortKey="Yang, Xiaoping" sort="Yang, Xiaoping" uniqKey="Yang X" first="Xiaoping" last="Yang">Xiaoping Yang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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